If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ), 'gf_id' => 'HOM05D000845', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000845' ), 'data_identifier' => 'HOM05D000845', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000845', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '706', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p03580' => 'bna', 'A04p16610' => 'bna', 'A04p31350' => 'bna', 'A05p18460' => 'bna', 'A06p01100' => 'bna', 'A09p49730' => 'bna', 'A09p57780' => 'bna', 'Aa31LG10G1900' => 'aar', 'Aa31LG3G990' => 'aar', 'Aa31LG7G14600' => 'aar', 'Aa31LG7G14610' => 'aar', 'Aa31LG7G15460' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1454' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3511' => 'aag', 'Actinidia06993' => 'ach', 'Actinidia06994' => 'ach', 'Actinidia09386' => 'ach', 'Actinidia12557' => 'ach', 'Actinidia16801' => 'ach', 'Actinidia16802' => 'ach', 'Actinidia20307' => 'ach', 'Actinidia20421' => 'ach', 'Actinidia24479' => 'ach', 'Actinidia28884' => 'ach', 'Actinidia31609' => 'ach', 'Actinidia35572' => 'ach', 'Actinidia37857' => 'ach', 'Ah.04g149940' => 'amhyb', 'Ah.06g185080' => 'amhyb', 'Ah.15g097660' => 'amhyb', 'AL1G61660' => 'aly', 'AL3G27340' => 'aly', 'AL4G11410' => 'aly', 'AL4G39030' => 'aly', 'AL5G38250' => 'aly', 'Aqoxy1G00102' => 'aox', 'Aqoxy1G03183' => 'aox', 'Aqoxy4G00997' => 'aox', 'Aqoxy6G00514' => 'aox', 'Aqoxy6G00516' => 'aox', 'Aqoxy6G02198' => 'aox', 'arahy.Tifrunner.gnm1.ann1.FVT433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GMX3PX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQGG4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZBF05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IV0UFI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3FDKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP4VSQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9S3N5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z0195M' => 'arhy', 'AT2G18830' => 'ath', 'AT2G22090' => 'ath', 'AT2G22100' => 'ath', 'AT2G41060' => 'ath', 'AT3G15010' => 'ath', 'AT3G56860' => 'ath', 'ATR0307G030' => 'atr', 'ATR0307G074' => 'atr', 'ATR0564G226' => 'atr', 'ATR0564G255' => 'atr', 'ATR0602G183' => 'atr', 'ATR0605G335' => 'atr', 'ATR1128G066' => 'atr', 'Atru.chr2.2219' => 'acertr', 'Atru.chr3.2889' => 'acertr', 'Atru.chr4.324' => 'acertr', 'Atru.chr8.1072' => 'acertr', 'Atru.chr8.930' => 'acertr', 'AUR62007431' => 'cqu', 'AUR62018470' => 'cqu', 'AUR62019527' => 'cqu', 'AUR62020954' => 'cqu', 'AUR62024318' => 'cqu', 'AUR62027307' => 'cqu', 'AUR62036111' => 'cqu', 'BcaB02g10944' => 'bca', 'BcaB04g17098' => 'bca', 'BcaB07g33343' => 'bca', 'BcaB08g35033' => 'bca', 'BcaC02g08742' => 'bca', 'BcaC02g12877' => 'bca', 'BcaC07g39997' => 'bca', 'BcaC07g40113' => 'bca', 'BcaC07g41097' => 'bca', 'BcaC08g43514' => 'bca', 'BcaC08g44068' => 'bca', 'BolC4t25238H' => 'bol', 'BolC4t26704H' => 'bol', 'BolC4t28380H' => 'bol', 'BolC6t35980H' => 'bol', 'BolC6t36646H' => 'bol', 'BolC8t50828H' => 'bol', 'BolC8t51664H' => 'bol', 'BolC9t57948H' => 'bol', 'BraA04t16077Z' => 'bra', 'BraA04t17295Z' => 'bra', 'BraA04t18592Z' => 'bra', 'BraA05t20738Z' => 'bra', 'BraA06t23337Z' => 'bra', 'BraA09t40426Z' => 'bra', 'BraA09t41170Z' => 'bra', 'C03p91290' => 'bna', 'C04p35660' => 'bna', 'C04p51110' => 'bna', 'C04p68750' => 'bna', 'C06p09020' => 'bna', 'C06p14640' => 'bna', 'C08p32100' => 'bna', 'C08p41010' => 'bna', 'CAN.G162.19' => 'can', 'CANSAT01G2323' => 'cansat', 'CANSAT35G0291' => 'cansat', 'CANSAT35G0425' => 'cansat', 'CANSAT54G1775' => 'cansat', 'CANSAT54G1918' => 'cansat', 'CARHR043480' => 'chi', 'CARHR109820' => 'chi', 'CARHR113220' => 'chi', 'CARHR113230' => 'chi', 'CARHR136170' => 'chi', 'CARHR167010' => 'chi', 'Carub.0001s4243' => 'cru', 'Carub.0004s0123' => 'cru', 'Carub.0004s0124' => 'cru', 'Carub.0004s2338' => 'cru', 'Carub.0005s2359' => 'cru', 'Ca_06163_v3' => 'car', 'Ca_08336_v3' => 'car', 'Ca_08511_v3' => 'car', 'Ca_23075_v3' => 'car', 'Ca_27357_v3' => 'car', 'CBR_g19053' => 'cbr', 'Cc01_g06940' => 'ccan', 'Cc02_g14810' => 'ccan', 'Cc04_g09530' => 'ccan', 'Cc05_g11110' => 'ccan', 'Cc05_g11330' => 'ccan', 'Cc05_g11350' => 'ccan', 'Cc06_g16140' => 'ccan', 'Cc07_g15760' => 'ccan', 'CDE02G0521' => 'cde', 'CDE02G1376' => 'cde', 'CDE02G1385' => 'cde', 'CDE04G1111' => 'cde', 'CDE04G2544' => 'cde', 'CDE07G1091' => 'cde', 'CDE08G0279' => 'cde', 'CDE08G0814' => 'cde', 'CDE10G0851' => 'cde', 'CDE10G1310' => 'cde', 'Cfa002034' => 'cfa', 'Cfa010269' => 'cfa', 'Cfa010273' => 'cfa', 'Cfa016906' => 'cfa', 'Cfa019589' => 'cfa', 'Cfa019890' => 'cfa', 'Cfa020106' => 'cfa', 'Ciclev10008394m.g' => 'ccl', 'Ciclev10011637m.g' => 'ccl', 'Ciclev10025608m.g' => 'ccl', 'CiPaw.03G137100' => 'cil', 'CiPaw.09G161000' => 'cil', 'CiPaw.10G027400' => 'cil', 'CiPaw.11G162600' => 'cil', 'CiPaw.12G114600' => 'cil', 'CiPaw.14G089600' => 'cil', 'CiPaw.14G089700' => 'cil', 'ClCG07G009360' => 'cla', 'ClCG07G010010' => 'cla', 'ClCG10G017420' => 'cla', 'COL.COLO4_11041' => 'col', 'COL.COLO4_17604' => 'col', 'COL.COLO4_18349' => 'col', 'COL.COLO4_36146' => 'col', 'Cpa.g.sc131.61' => 'cpa', 'Cpa.g.sc33.184' => 'cpa', 'Cpa.g.sc85.83' => 'cpa', 'CsaV3_2G017690' => 'csa', 'CsaV3_3G038940' => 'csa', 'CsaV3_4G004880' => 'csa', 'CsaV3_4G008320' => 'csa', 'CsaV3_UNG186420' => 'csa', 'CsaV3_UNG186430' => 'csa', 'CsaV3_UNG186440' => 'csa', 'CSS0000570' => 'camsi', 'CSS0009805' => 'camsi', 'CSS0018362' => 'camsi', 'CSS0018435' => 'camsi', 'CSS0024304' => 'camsi', 'CSS0025879' => 'camsi', 'CSS0026528' => 'camsi', 'CSS0029147' => 'camsi', 'CSS0029802' => 'camsi', 'CSS0031418' => 'camsi', 'CSS0031671' => 'camsi', 'CSS0032129' => 'camsi', 'CSS0033380' => 'camsi', 'CSS0040414' => 'camsi', 'CSS0042701' => 'camsi', 'CSS0045820' => 'camsi', 'CSS0049139' => 'camsi', 'DCAR_001005' => 'dca', 'DCAR_009108' => 'dca', 'DCAR_018977' => 'dca', 'DCAR_020615' => 'dca', 'DCAR_021016' => 'dca', 'DCAR_028010' => 'dca', 'DCAR_029927' => 'dca', 'Dinv04617' => 'din', 'Dinv10716' => 'din', 'Dinv14281' => 'din', 'Dinv14549' => 'din', 'Dinv14971' => 'din', 'Dinv18348' => 'din', 'Dinv19515' => 'din', 'Dinv37058' => 'din', 'Dinv37059' => 'din', 'Dinv40664' => 'din', 'Duzib093G1557' => 'dzi', 'Duzib128G1022' => 'dzi', 'Duzib147G1588' => 'dzi', 'Duzib150G1303' => 'dzi', 'Duzib168G2188' => 'dzi', 'Duzib170G0099' => 'dzi', 'Duzib170G0780' => 'dzi', 'Duzib213G0296' => 'dzi', 'Duzib264G0024' => 'dzi', 'ECA233G1930' => 'eca', 'ECA233G4044' => 'eca', 'ECA236G3338' => 'eca', 'ECA238G0679' => 'eca', 'ECA247G1398' => 'eca', 'ECA248G2347' => 'eca', 'EL10Ac3g07387' => 'bvu', 'EL10Ac5g11902' => 'bvu', 'Eucgr.B03777' => 'egr', 'Eucgr.F01217' => 'egr', 'Eucgr.F01459' => 'egr', 'Eucgr.F03253' => 'egr', 'Eucgr.G02996' => 'egr', 'FAN02G2064' => 'fan', 'FAN02G2865' => 'fan', 'FAN02G3848' => 'fan', 'FAN05G0760' => 'fan', 'FAN05G1503' => 'fan', 'FAN05G2707' => 'fan', 'FAN05G5455' => 'fan', 'FAN11G0270' => 'fan', 'FAN11G0763' => 'fan', 'FAN13G2876' => 'fan', 'FAN14G1152' => 'fan', 'FAN14G1444' => 'fan', 'FAN14G3317' => 'fan', 'FAN14G4839' => 'fan', 'FAN15G2175' => 'fan', 'FAN16G1008' => 'fan', 'FAN16G3147' => 'fan', 'FAN19G0365' => 'fan', 'FAN19G0445' => 'fan', 'FAN21G0350' => 'fan', 'FAN21G2031' => 'fan', 'FAN21G3848' => 'fan', 'FAN23G1862' => 'fan', 'FAN23G2997' => 'fan', 'FAN25G2321' => 'fan', 'FAN25G2485' => 'fan', 'FAN26G3079' => 'fan', 'FAN28G0196' => 'fan', 'FAN28G2282' => 'fan', 'FvH4_1g21870' => 'fve', 'FvH4_1g22591' => 'fve', 'FvH4_2g11380' => 'fve', 'FvH4_3g07890' => 'fve', 'FvH4_3g18630' => 'fve', 'FvH4_6g18930' => 'fve', 'FvH4_6g22550' => 'fve', 'Glyma.02G139900' => 'gma', 'Glyma.02G275400' => 'gma', 'Glyma.03G118800' => 'gma', 'Glyma.03G143400' => 'gma', 'Glyma.06G231000' => 'gma', 'Glyma.07G205500' => 'gma', 'Glyma.12G159600' => 'gma', 'Glyma.14G040800' => 'gma', 'Glyma.19G122900' => 'gma', 'Glyma.19G146400' => 'gma', 'Gohir.A01G057800' => 'ghi', 'Gohir.A03G034500' => 'ghi', 'Gohir.A04G038900' => 'ghi', 'Gohir.A04G051600' => 'ghi', 'Gohir.A05G102000' => 'ghi', 'Gohir.A08G196900' => 'ghi', 'Gohir.D01G044200' => 'ghi', 'Gohir.D03G133800' => 'ghi', 'Gohir.D04G098000' => 'ghi', 'Gohir.D05G101700' => 'ghi', 'Gohir.D05G343950' => 'ghi', 'Gohir.D05G344200' => 'ghi', 'Gohir.D08G214100' => 'ghi', 'Gorai.002G063400' => 'gra', 'Gorai.003G140900' => 'gra', 'Gorai.004G228200' => 'gra', 'Gorai.006G067200' => 'gra', 'Gorai.009G105900' => 'gra', 'Gorai.009G371500' => 'gra', 'Gorai.009G372200' => 'gra', 'GSVIVG01022197001' => 'vvi', 'GSVIVG01033516001' => 'vvi', 'GSVIVG01037490001' => 'vvi', 'GSVIVG01037491001' => 'vvi', 'HanXRQChr01g0009641' => 'han', 'HanXRQChr02g0033571' => 'han', 'HanXRQChr13g0390141' => 'han', 'HanXRQChr13g0397381' => 'han', 'HanXRQChr14g0445511' => 'han', 'HanXRQChr14g0460181' => 'han', 'HanXRQChr15g0468901' => 'han', 'HanXRQChr16g0518791' => 'han', 'Haze_19969' => 'cav', 'Haze_20361' => 'cav', 'Haze_23678' => 'cav', 'Haze_23687' => 'cav', 'Haze_25009' => 'cav', 'Hma1.2p1_0097F.1_g048100' => 'hma', 'Hma1.2p1_0155F.1_g068160' => 'hma', 'Hma1.2p1_0183F.1_g080770' => 'hma', 'Hma1.2p1_0375F.1_g138530' => 'hma', 'Hma1.2p1_0416F.1_g148700' => 'hma', 'Hma1.2p1_0427F.1_g150680' => 'hma', 'Hma1.2p1_0906F.1_g235410' => 'hma', 'Hma1.2p1_1106F.1_g257650' => 'hma', 'Hma1.2p1_1106F.1_g257655' => 'hma', 'Hma1.2p1_1426F.1_g282870' => 'hma', 'Hma1.2p1_1632F.1_g294680' => 'hma', 'Hma1.2p1_3872F.1_g337860' => 'hma', 'HPP92_004309' => 'vpl', 'HPP92_013357' => 'vpl', 'HPP92_013358' => 'vpl', 'HPP92_014351' => 'vpl', 'HPP92_014375' => 'vpl', 'HPP92_015616' => 'vpl', 'HPP92_016470' => 'vpl', 'HPP92_017818' => 'vpl', 'HPP92_024138' => 'vpl', 'HPP92_027141' => 'vpl', 'HPP92_028184' => 'vpl', 'Hund14326' => 'sun', 'Hund14327' => 'sun', 'Hund24470' => 'sun', 'Hund24788' => 'sun', 'Lalb_Chr03g0031081' => 'lal', 'Lalb_Chr04g0249611' => 'lal', 'Lalb_Chr06g0174241' => 'lal', 'Lalb_Chr09g0328011' => 'lal', 'Lalb_Chr10g0105971' => 'lal', 'Lalb_Chr14g0365171' => 'lal', 'Lalb_Chr15g0078911' => 'lal', 'Lalb_Chr16g0384291' => 'lal', 'Lalb_Chr17g0347601' => 'lal', 'Lalb_Chr18g0059131' => 'lal', 'Lalb_Chr19g0133881' => 'lal', 'Lj1A833G53' => 'lonja', 'Lj1g0021214' => 'lja', 'Lj1g0023973' => 'lja', 'Lj1P252T26' => 'lonja', 'Lj1P272T16' => 'lonja', 'Lj2A559T12' => 'lonja', 'Lj2A935T44' => 'lonja', 'Lj2C297T16' => 'lonja', 'Lj2C416T4' => 'lonja', 'Lj3g0007758' => 'lja', 'Lj4g0025569' => 'lja', 'Lj8P151T14' => 'lonja', 'LjContig00564g0007147' => 'lja', 'Lsat_1_v5_gn_2_121020' => 'lsa', 'Lsat_1_v5_gn_2_37481' => 'lsa', 'Lsat_1_v5_gn_2_66440' => 'lsa', 'Lsat_1_v5_gn_4_49761' => 'lsa', 'Lsat_1_v5_gn_5_65320' => 'lsa', 'Lsat_1_v5_gn_7_23020' => 'lsa', 'Lsat_1_v5_gn_8_75500' => 'lsa', 'Manes.01G001600' => 'mes', 'Manes.01G001700' => 'mes', 'Manes.08G045300' => 'mes', 'Manes.08G067200' => 'mes', 'Manes.09G002000' => 'mes', 'Manes.09G033200' => 'mes', 'Manes.16G038000' => 'mes', 'Manes.17G054700' => 'mes', 'Mapoly0040s0006' => 'mpo', 'Mapoly0188s0017' => 'mpo', 'MBI03_g42221_MAGBIO' => 'mbi', 'MBI03_g42222_MAGBIO' => 'mbi', 'MBI04_g32789_MAGBIO' => 'mbi', 'MBI05_g01298_MAGBIO' => 'mbi', 'MBI05_g01308_MAGBIO' => 'mbi', 'MBI06_g11037_MAGBIO' => 'mbi', 'MBI06_g25990_MAGBIO' => 'mbi', 'MBI07_g21393_MAGBIO' => 'mbi', 'MBI13_g00564_MAGBIO' => 'mbi', 'MBI15_g22208_MAGBIO' => 'mbi', 'MBI15_g22209_MAGBIO' => 'mbi', 'MBI19_g07014_MAGBIO' => 'mbi', 'MBI19_g34995_MAGBIO' => 'mbi', 'MBI19_g36828_MAGBIO' => 'mbi', 'MD01G1020300' => 'mdo', 'MD03G1240500' => 'mdo', 'MD10G1280800' => 'mdo', 'MD11G1259900' => 'mdo', 'MD12G1058300' => 'mdo', 'MD13G1221000' => 'mdo', 'MD15G1332000' => 'mdo', 'Medtr4g088010' => 'mtr', 'Medtr5g088220' => 'mtr', 'Medtr7g088140' => 'mtr', 'Medtr8g463890' => 'mtr', 'MELO3C009638.2' => 'cme', 'MELO3C016101.2' => 'cme', 'MELO3C017573.2' => 'cme', 'MELO3C020961.2' => 'cme', 'Migut.D00699' => 'egut', 'Migut.H01979' => 'egut', 'Migut.J01596' => 'egut', 'Migut.K00048' => 'egut', 'Migut.M01047' => 'egut', 'Migut.N02397' => 'egut', 'MSTRG.14221' => 'ama', 'MSTRG.15739' => 'ama', 'MSTRG.16145' => 'ama', 'MSTRG.18478' => 'ama', 'MSTRG.19747' => 'ama', 'MSTRG.21325' => 'ama', 'MSTRG.7399' => 'ama', 'Nitab4.5_0000016g0350' => 'nta', 'Nitab4.5_0000035g0070' => 'nta', 'Nitab4.5_0000246g0150' => 'nta', 'Nitab4.5_0000428g0020' => 'nta', 'Nitab4.5_0000484g0010' => 'nta', 'Nitab4.5_0000501g0010' => 'nta', 'Nitab4.5_0000613g0180' => 'nta', 'Nitab4.5_0001002g0060' => 'nta', 'Nitab4.5_0001472g0110' => 'nta', 'Nitab4.5_0001474g0040' => 'nta', 'Nitab4.5_0002915g0070' => 'nta', 'Nitab4.5_0005440g0010' => 'nta', 'Nitab4.5_0006037g0020' => 'nta', 'Nn1g09094' => 'nnu', 'Nn2g15621' => 'nnu', 'Nn5g28959' => 'nnu', 'Nn5g28966' => 'nnu', 'Nn7g36034' => 'nnu', 'Nn7g37239' => 'nnu', 'Nn7g37252' => 'nnu', 'Oeu001089.1' => 'oeu', 'Oeu002121.1' => 'oeu', 'Oeu028388.1' => 'oeu', 'Oeu036467.1' => 'oeu', 'Oeu042481.1' => 'oeu', 'Oeu051115.1' => 'oeu', 'Oeu051449.2' => 'oeu', 'Oeu060730.1' => 'oeu', 'Oeu061345.1' => 'oeu', 'Oeu063622.2' => 'oeu', 'Os01g0265800' => 'osa', 'Os01g0614500' => 'osa', 'Os02g0602600' => 'osa', 'Os04g0636900' => 'osa', 'Peaxi162Scf00050g01612' => 'pax', 'Peaxi162Scf00069g02110' => 'pax', 'Peaxi162Scf00258g00211' => 'pax', 'Peaxi162Scf00440g00034' => 'pax', 'Peaxi162Scf01068g00033' => 'pax', 'Peaxi162Scf01479g00014' => 'pax', 'Peaxi162Scf01503g00022' => 'pax', 'PGR004G2756' => 'pgr', 'PGR042G0501' => 'pgr', 'PGR083G0635' => 'pgr', 'PGR102G2783' => 'pgr', 'PGR119G2571' => 'pgr', 'PGR142G0919' => 'pgr', 'PGSC0003DMG400006349' => 'stu', 'PGSC0003DMG400012006' => 'stu', 'PGSC0003DMG400012045' => 'stu', 'PGSC0003DMG400012393' => 'stu', 'PGSC0003DMG400015382' => 'stu', 'PGSC0003DMG400022692' => 'stu', 'PGSC0003DMG400028209' => 'stu', 'PGSC0003DMG401003169' => 'stu', 'Phvul.001G100900' => 'pvu', 'Phvul.001G141300' => 'pvu', 'Phvul.003G058600' => 'pvu', 'Phvul.004G052900' => 'pvu', 'Phvul.008G206200' => 'pvu', 'Phvul.011G159400' => 'pvu', 'Potri.001G220600' => 'ptr', 'Potri.001G377400' => 'ptr', 'Potri.004G055400' => 'ptr', 'Potri.005G081600' => 'ptr', 'Potri.006G025600' => 'ptr', 'Potri.006G190900' => 'ptr', 'Potri.011G065200' => 'ptr', 'Potri.012G109100' => 'ptr', 'Potri.016G023800' => 'ptr', 'Potri.016G048100' => 'ptr', 'Pp3c12_14110' => 'ppa', 'Pp3c14_2740' => 'ppa', 'Pp3c1_25150' => 'ppa', 'Pp3c4_4670' => 'ppa', 'Prupe.4G060300' => 'ppe', 'Prupe.4G170100' => 'ppe', 'Prupe.6G172000' => 'ppe', 'Prupe.6G177300' => 'ppe', 'Prupe.6G197500' => 'ppe', 'Prupe.7G075100' => 'ppe', 'Psat2g021680' => 'psa', 'Psat2g021720' => 'psa', 'Psat3g069200' => 'psa', 'Psat3g069280' => 'psa', 'Psat3g083240' => 'psa', 'Psat4g135480' => 'psa', 'Psat7g118800' => 'psa', 'PSO339G3335' => 'pso', 'PSO384G4901' => 'pso', 'PSO541G0119' => 'pso', 'PSO541G0759' => 'pso', 'PSO541G0832' => 'pso', 'PSO541G3916' => 'pso', 'PSO541G4194' => 'pso', 'PSO541G4253' => 'pso', 'PSO675G5136' => 'pso', 'PSO675G5634' => 'pso', 'PSO675G7099' => 'pso', 'QL01p007467' => 'qlo', 'QL01p007490' => 'qlo', 'QL06p033219' => 'qlo', 'QL07p015532' => 'qlo', 'QL07p015562' => 'qlo', 'QL07p023287' => 'qlo', 'QL08p026860' => 'qlo', 'RcHm_v2.0_Chr1g0364191' => 'rch', 'RcHm_v2.0_Chr2g0115871' => 'rch', 'RcHm_v2.0_Chr2g0116621' => 'rch', 'RcHm_v2.0_Chr3g0480051' => 'rch', 'RcHm_v2.0_Chr5g0010701' => 'rch', 'RcHm_v2.0_Chr5g0031451' => 'rch', 'Rhsim04G0097400' => 'rsi', 'Rhsim04G0211500' => 'rsi', 'Rhsim06G0205600' => 'rsi', 'Rhsim09G0098800' => 'rsi', 'Rhsim10G0154800' => 'rsi', 'Rhsim12G0045100' => 'rsi', 'Rhsim13G0191100' => 'rsi', 'Rhsim13G0201700' => 'rsi', 'Rhsim13G0201800' => 'rsi', 'RhsimUnG0021800' => 'rsi', 'RhsimUnG0213100' => 'rsi', 'RhsimUnG0219300' => 'rsi', 'Sabra04G0036100' => 'sbr', 'Sabra05G0066900' => 'sbr', 'Sabra06G0018800' => 'sbr', 'Sabra11G0046900' => 'sbr', 'Sabra16G0022100' => 'sbr', 'Sabra16G0030000' => 'sbr', 'Sabra16G0051500' => 'sbr', 'Sabra16G0123900' => 'sbr', 'Sabra16G0131200' => 'sbr', 'Sabra16G0248600' => 'sbr', 'SalBow1G1349' => 'sbo', 'SalBow1G1894' => 'sbo', 'SalBow1G2394' => 'sbo', 'SalBow3G4634' => 'sbo', 'SalBow6G0912' => 'sbo', 'SalBow6G5213' => 'sbo', 'SalBow8G1744' => 'sbo', 'SalBow8G5399' => 'sbo', 'Sc16g0007470' => 'sci', 'Sc19g0007750' => 'sci', 'Sc25g0005130' => 'sci', 'Sc25g0005620' => 'sci', 'Sed0000345' => 'sed', 'Sed0001372' => 'sed', 'Sed0012476' => 'sed', 'Sed0014988' => 'sed', 'Sed0021023' => 'sed', 'Sed0024539' => 'sed', 'SEGI_02558' => 'sgi', 'SEGI_02621' => 'sgi', 'SEGI_04686' => 'sgi', 'SEGI_07852' => 'sgi', 'SEGI_15465' => 'sgi', 'SEGI_23436' => 'sgi', 'SEGI_23848' => 'sgi', 'SEGI_25374' => 'sgi', 'SEGI_27939' => 'sgi', 'SEGI_35419' => 'sgi', 'SEGI_37425' => 'sgi', 'SEGI_38247' => 'sgi', 'SGA_v2.0_scaffold130G34314' => 'sas', 'SGA_v2.0_scaffold16G07674' => 'sas', 'SGA_v2.0_scaffold1G00033' => 'sas', 'SGA_v2.0_scaffold26G11364' => 'sas', 'SGA_v2.0_scaffold274G46474' => 'sas', 'SGA_v2.0_scaffold29G12154' => 'sas', 'SGA_v2.0_scaffold47G17734' => 'sas', 'SGA_v2.0_scaffold69G23210' => 'sas', 'SGA_v2.0_scaffold79G25551' => 'sas', 'SGA_v2.0_scaffold8G04524' => 'sas', 'SGA_v2.0_scaffold94G28433' => 'sas', 'SHI11651' => 'shi', 'SMO119G0397' => 'smo', 'SMO275G0030' => 'smo', 'SMO367G1136' => 'smo', 'SMO367G1149' => 'smo', 'Solyc01g008970.4' => 'sly', 'Solyc02g021560.4' => 'sly', 'Solyc10g055360.1' => 'sly', 'Solyc10g081330.3' => 'sly', 'Solyc12g014210.3' => 'sly', 'Sopen01g004460' => 'spe', 'Sopen02g006100' => 'spe', 'Sopen02g006110' => 'spe', 'Sopen04g005740' => 'spe', 'Sopen10g031830' => 'spe', 'Sopen12g006000' => 'spe', 'Sp1g39820' => 'spa', 'Sp3g13210' => 'spa', 'Sp4g01120' => 'spa', 'Sp4g01130' => 'spa', 'Sp4g23390' => 'spa', 'Sp5g05730' => 'spa', 'TAR280G0002' => 'tar', 'TAR369G0798' => 'tar', 'TAR623G0035' => 'tar', 'TAR624G0065' => 'tar', 'TAR624G0884' => 'tar', 'TAR624G0951' => 'tar', 'TAR625G1119' => 'tar', 'TAR626G0860' => 'tar', 'TAR627G0936' => 'tar', 'TAR628G0784' => 'tar', 'TAR633G1111' => 'tar', 'TAR633G1717' => 'tar', 'TAR633G2486' => 'tar', 'TAR636G0012' => 'tar', 'TAR636G1253' => 'tar', 'THA.LOC104803246' => 'tha', 'THA.LOC104804147' => 'tha', 'THA.LOC104804848' => 'tha', 'THA.LOC104809925' => 'tha', 'THA.LOC104815479' => 'tha', 'Thecc.01G109400' => 'tca', 'Thecc.05G169300' => 'tca', 'Thecc.07G105400' => 'tca', 'Thecc.09G338900' => 'tca', 'Thhalv10000197m.g' => 'esa', 'Thhalv10000207m.g' => 'esa', 'Thhalv10005930m.g' => 'esa', 'Thhalv10011518m.g' => 'esa', 'Thhalv10016684m.g' => 'esa', 'TPR.G11317' => 'tpr', 'TPR.G13239' => 'tpr', 'TPR.G13248' => 'tpr', 'TPR.G23551' => 'tpr', 'TPR.G23672' => 'tpr', 'TPR.G25015' => 'tpr', 'TPR.G32272' => 'tpr', 'TPR.G34594' => 'tpr', 'TPR.G40326' => 'tpr', 'TWI31G0599' => 'twi', 'TWI31G1130' => 'twi', 'TWI38G0971' => 'twi', 'TWI38G1407' => 'twi', 'TWI39G0195' => 'twi', 'TWI53G1214' => 'twi', 'TWI53G1304' => 'twi', 'TWI63G0017' => 'twi', 'TWI74G0710' => 'twi', 'TWI74G0990' => 'twi', 'TWI74G1038' => 'twi', 'unitig_0.g2273' => 'ugi', 'unitig_60.g25637' => 'ugi', 'unitig_736.g22298' => 'ugi', 'unitig_746.g26740' => 'ugi', 'unitig_746.g26897' => 'ugi', 'unitig_899.g15242' => 'ugi', 'vmacro02605' => 'vma', 'vmacro03062' => 'vma', 'vmacro03931' => 'vma', 'vmacro07602' => 'vma', 'vmacro08249' => 'vma', 'vmacro09112' => 'vma', 'vmacro11914' => 'vma', 'vmacro15967' => 'vma', 'vmacro17429' => 'vma', 'VMungo0251G0709' => 'vmu', 'VMungo0464G1867' => 'vmu', 'VMungo0647G2053' => 'vmu', 'VMungo0720G1913' => 'vmu', 'VMungo1127G0421' => 'vmu', 'VMungo1383G0931' => 'vmu', 'VMungo1383G3564' => 'vmu', 'Zm00001eb069130' => 'zma', 'Zm00001eb128200' => 'zma', 'Zm00001eb162020' => 'zma', 'Zm00001eb358100' => 'zma', 'Zm00001eb431740' => 'zma' ) $gf_id = 'HOM05D000845' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000845' ) $data_identifier = 'HOM05D000845' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 7, 'bca' => (int) 11, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 5, 'fan' => (int) 29, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 12, 'vpl' => (int) 11, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 14, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 8, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 12, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 7, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431740' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1